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    <title>KEGG Network Extractor, Visualizor and Analyser</title>
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  <h1>KEGG Network Extractor, Visualizer and Analyser</h1>
  <b>This site allows you to obtain, visualize and analyze organism-specific metabolic networks based on KEGG (release 56, Dec 2010). 
  For more help see <a href="help">here</a>.</b>
  <form action="{% url ktool.views.searchnew %}"  enctype="multipart/form-data" method="post"> {% csrf_token %}	 
<h2>For organisms already in KEGG</h2>
	    1. Enter one or more KEGG organism abbreviations separated by "," (eg. "eco" or "eco,bsu") If more than one organisms are selected, a merged network containing reactions from all organisms will be generated. Organism abbreviations can be found from <a href="http://www.genome.jp/kegg/catalog/org_list.html">KEGG</a>. You can also enter "all" to get a network including all reactions which are in at least one organism. <br/>
	    {{f.orgname}}<br/>
	    2. choose the network reconstruction method, you can choose KO based method(gene-KO-reaction) or EC based method (gene-EC-reaction) or both to get a more complete network.<br/>
	    KO based {{f.ko}} EC based{{f.ec}}  <a href="help" title="explanation">?</a> <br/><br/>
<h2>For newly sequenced organisms not in KEGG or any user generated network</h2>
Enter KEGG reaction IDs (eg. R00001,R00002), EC numbers(1.1.1.1,1.1.1.2) or KO IDs (K00161,K00162). You can also upload a text file which contains one ID per line (<a href="/maps/ecinput.txt">an example file</a>).<br/>
	    {{f.input}} {{f.inlist}}<br/>
	    or upload a file {{f.file}}<br/><br/>
	    <h2>A subnetwork can be generated by selecting one or more pathways below.</h2>
{{f.pa}}<br/>
    <input type="submit" value="Search">
    </form>
    {% if f.orgname %}
    {% if not reactions %}
    <h2> {{err}}</h2>
    {% endif %}
    {% endif %}
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			Site developed and maintained by Dr Hongwu Ma. Any comments, suggestions please send email to: hw.ma@ed.ac.uk		
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